2YVZ Transport Protein date Apr 18, 2007
title Crystal Structure Of Magnesium Transporter Mgte Cytosolic Do Mg2+-Free Form
authors M.Hattori, Y.Tanaka, S.Fukai, R.Ishitani, O.Nureki
compound source
Molecule: Mg2+ Transporter Mgte
Chain: A, B
Fragment: Cytosolic Domain
Synonym: Mgte
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.346 R_Free 0.370
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.112 100.183 100.158 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.90 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the MgtE Mg2+ transporter., Hattori M, Tanaka Y, Fukai S, Ishitani R, Nureki O, Nature. 2007 Aug 30;448(7157):1072-5. Epub 2007 Aug 15. PMID:17700703
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2yvz.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2YVZ
  • CSU: Contacts of Structural Units for 2YVZ
  • Likely Quarternary Molecular Structure file(s) for 2YVZ
  • Structure Factors (61 Kb)
  • Retrieve 2YVZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YVZ from S2C, [Save to disk]
  • Re-refined 2yvz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YVZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YVZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YVZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yvz_B] [2yvz] [2yvz_A]
  • SWISS-PROT database: [Q5SMG8]
  • Belongs to the mg(2+) transporter-e (mgte) family according to TCDB.
  • Domain organization of [MGTE_THET8] by SWISSPFAM
  • Domains found in 2YVZ: [CBS] [MgtE_N ] by SMART
    • Other resources with information on 2YVZ
  • Community annotation for 2YVZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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