2YXL	Transferase	date	Apr 26, 2007
title	Crystal Structure Of Ph0851
authors	Y.Hikida, M.Kuratani, Y.Bessho, R.Ishii, S.Sekine, S.Yokoyama, Rik Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: 450aa Long Hypothetical Fmu Protein Chain: A Synonym: Ph0851 Protein Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 70601 Strain: Ot3 Gene: Ph0851 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 32 2 1	R_factor 0.212 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.621 116.621 93.684 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	SFG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase., Hikida Y, Kuratani M, Bessho Y, Sekine SI, Yokoyama S, Acta Crystallogr D Biol Crystallogr. 2010 Dec;66(Pt 12):1301-7. Epub 2010, Nov 16. PMID:21123870

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2yxl.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 2YXL CSU: Contacts of Structural Units for 2YXL Likely Quarternary Molecular Structure file(s) for 2YXL Structure Factors (351 Kb) Retrieve 2YXL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YXL from S2C, [Save to disk] Re-refined 2yxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YXL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YXL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YXL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yxl_A] [2yxl] SWISS-PROT database: [O58581] Domain organization of [O58581_PYRHO] by SWISSPFAM

Other resources with information on 2YXL

Community annotation for 2YXL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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