2YXS	Sugar Binding Protein	date	Apr 27, 2007
title	Crystal Structure Of N-Terminal Domain Of Human Galectin-8 W Lactose
authors	S.Kishishita, A.Nishino, K.Murayama, T.Terada, M.Shirouzu, S.Yoko Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Galectin-8 Variant Chain: A Fragment: N-Terminal Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cell-Free Protein Synthesis Expression_system_vector_type: Plasmid Expression_system_plasmid: Pk050620-06
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.913 50.551 69.336 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.13 Å
ligand	BGC, GAL, MSE BindingDB	enzyme
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (2yxs.pdb1.gz) 27 Kb LPC: Ligand-Protein Contacts for 2YXS CSU: Contacts of Structural Units for 2YXS Likely Quarternary Molecular Structure file(s) for 2YXS Structure Factors (67 Kb) Retrieve 2YXS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YXS from S2C, [Save to disk] Re-refined 2yxs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YXS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YXS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YXS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yxs] [2yxs_A] SWISS-PROT database: [O00214] Domain organization of [LEG8_HUMAN] by SWISSPFAM Domains found in 2YXS: [GLECT] [Gal-bind_lectin ] by SMART

Other resources with information on 2YXS

Community annotation for 2YXS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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