2Z1Z	Transferase	date	May 16, 2007
title	Crystal Structure Of Ll-Diaminopimelate Aminotransferase Fro Arabidopsis Thaliana Complexed With L-Malate Ion
authors	N.Watanabe, M.M.Cherney, M.J.Van Belkum, S.L.Marcus, M.D.Flegel, M.K.Deyholos, J.C.Vederas, M.N.G.James
compound		source
Molecule: Ll-Diaminopimelate Aminotransferase Chain: A, B Synonym: Hypothetical Protein At4g33680, Hypothetical Prote T16l1.170; Ec: 2.6.1.83 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: At4g33680 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M15(Prep4) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe60
symmetry	Space Group: P 32 2 1	R_factor 0.180 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.587 102.587 172.939 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MLT, PLP	enzyme	Transferase E.C.2.6.1.83 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of ll-Diaminopimelate Aminotransferase from Arabidopsis thaliana: A Recently Discovered Enzyme in the Biosynthesis of l-Lysine by Plants and Chlamydia., Watanabe N, Cherney MM, van Belkum MJ, Marcus SL, Flegel MD, Clay MD, Deyholos MK, Vederas JC, James MN, J Mol Biol. 2007 May 26;. PMID:17583737

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (2z1z.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 2Z1Z CSU: Contacts of Structural Units for 2Z1Z Likely Quarternary Molecular Structure file(s) for 2Z1Z Structure Factors (608 Kb) Retrieve 2Z1Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z1Z from S2C, [Save to disk] Re-refined 2z1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z1Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Z1Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Z1Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z1z_A] [2z1z_B] [2z1z] SWISS-PROT database: [Q93ZN9] Domain organization of [DAPAT_ARATH] by SWISSPFAM

Other resources with information on 2Z1Z

Community annotation for 2Z1Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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