2Z3U Oxidoreductase date Jun 06, 2007
title Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome P4 (Cyp245a1)
authors M.Makino, H.Sugimoto, Y.Shiro, S.Asamizu, H.Onaka, S.Nagano
compound source
Molecule: Cytochrome P450
Chain: A
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Streptomyces Sp. Tp-A0274
Organism_taxid: 171258
Gene: Stap
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.627 66.610 136.813 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CRR, EDO, HEM enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton., Makino M, Sugimoto H, Shiro Y, Asamizu S, Onaka H, Nagano S, Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11591-6. Epub 2007 Jul 2. PMID:17606921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2z3u.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 2Z3U
  • CSU: Contacts of Structural Units for 2Z3U
  • Likely Quarternary Molecular Structure file(s) for 2Z3U
  • Structure Factors (138 Kb)
  • Retrieve 2Z3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z3U from S2C, [Save to disk]
  • Re-refined 2z3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z3U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z3U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z3u] [2z3u_A]
  • SWISS-PROT database: [Q83WG3]
  • Domain organization of [Q83WG3_9ACTO] by SWISSPFAM
  • Other resources with information on 2Z3U
  • Community annotation for 2Z3U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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