2Z51 Metal Transport date Jun 26, 2007
title Crystal Structure Of Arabidopsis Cnfu Involved In Iron-Sulfu Biosynthesis
authors T.Yabe, E.Yamashita, M.Nakai
compound source
Molecule: Nifu-Like Protein 2, Chloroplast
Chain: A
Fragment: Residues 1-154
Synonym: Atcnfu2, Atcnfu-V
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Gene: Nifu2, Cnfu2, Nfu2
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 2 2 2
R_factor 0.135 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.546 57.394 61.303 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of Arabidopsis CnfU protein: an iron-sulfur cluster biosynthetic scaffold in chloroplasts., Yabe T, Yamashita E, Kikuchi A, Morimoto K, Nakagawa A, Tsukihara T, Nakai M, J Mol Biol. 2008 Aug 1;381(1):160-73. Epub 2008 Jun 4. PMID:18585737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2z51.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 2Z51
  • CSU: Contacts of Structural Units for 2Z51
  • Likely Quarternary Molecular Structure file(s) for 2Z51
  • Structure Factors (260 Kb)
  • Retrieve 2Z51 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z51 from S2C, [Save to disk]
  • Re-refined 2z51 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Z51 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Z51
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z51, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z51] [2z51_A]
  • SWISS-PROT database: [Q93W20]
  • Domain organization of [NIFU2_ARATH] by SWISSPFAM
    • Other resources with information on 2Z51
  • Community annotation for 2Z51 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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