2Z8P	Lyase	date	Sep 07, 2007
title	Structural Basis For The Catalytic Mechanism Of Phosphothreo
authors	L.Chen, H.Wang, L.Gu, N.Huang, J.M.Zhou, J.Chai
compound		source
Molecule: 27.5 Kda Virulence Protein Chain: A Synonym: Spvc, Phosphothreonine Lyase Engineered: Yes Mutation: Yes		Organism_scientific: Salmonella Typhimurium Organism_taxid: 602 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
Molecule: (Gly)(Glu)(Ala)(Tpo)(Val)(Ptr)(Ala) Chain: B Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized.
symmetry	Space Group: P 21 21 21	R_factor 0.211 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.310 71.420 98.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	PTR, TPO	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the catalytic mechanism of phosphothreonine lyase., Chen L, Wang H, Zhang J, Gu L, Huang N, Zhou JM, Chai J, Nat Struct Mol Biol. 2008 Jan;15(1):101-2. Epub 2007 Dec 16. PMID:18084305

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (2z8p.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 2Z8P CSU: Contacts of Structural Units for 2Z8P Likely Quarternary Molecular Structure file(s) for 2Z8P Structure Factors (193 Kb) Retrieve 2Z8P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z8P from S2C, [Save to disk] Re-refined 2z8p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z8P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Z8P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Z8P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z8p] [2z8p_A] [2z8p_B] SWISS-PROT database: [P0A2M9] Domain organization of [VRP3_SALTY] by SWISSPFAM

Other resources with information on 2Z8P

Community annotation for 2Z8P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---