2Z9Z	Lipid Transport	date	Sep 26, 2007
title	Crystal Structure Of Cert Start Domain(N504a Mutant), In Com C10-Diacylglycerol
authors	N.Kudo, K.Kumagai, S.Wakatsuki, M.Nishijima, K.Hanada, R.Kato
compound		source
Molecule: Lipid-Transfer Protein Cert Chain: A Fragment: Cert Start Domain (Residues 347-598) Synonym: Cdna Flj34532 Fis, Clone Hlung2008235, Highly Simi Homo Sapiens Goodpasture Antigen-Binding Protein (Col4a3bp) Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cert Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-5x1 (Modified)
symmetry	Space Group: P 1 21 1	R_factor 0.240 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.768 75.374 42.439 90.00 108.85 90.00
method	X-Ray Diffraction	resolution	1.74 Å
ligand	DDR	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide., Kudo N, Kumagai K, Tomishige N, Yamaji T, Wakatsuki S, Nishijima M, Hanada K, Kato R, Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):488-93. Epub 2008 Jan 9. PMID:18184806

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (2z9z.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 2Z9Z CSU: Contacts of Structural Units for 2Z9Z Likely Quarternary Molecular Structure file(s) for 2Z9Z Structure Factors (162 Kb) Retrieve 2Z9Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z9Z from S2C, [Save to disk] Re-refined 2z9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z9Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Z9Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Z9Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z9z] [2z9z_A] SWISS-PROT database: [Q9Y5P4] Domain organization of [C43BP_HUMAN] by SWISSPFAM Domain found in 2Z9Z: [START ] by SMART

Other resources with information on 2Z9Z

Community annotation for 2Z9Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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