2ZLE Hydrolase date Apr 09, 2008
title Cryo-Em Structure Of Degp12omp
authors E.Schaefer, H.R.Saibil
compound source
Molecule: Protease Do
Chain: A, B, C, E, F, G, H, I, J, K, L, M
Synonym: Degp
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Degp, Htra, Ptd
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Outer Membrane Protein C
Chain: D
Synonym: Porin Ompc, Outer Membrane Protein 1b
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ompc, Meoa, Par
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 28.00 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
D
  • virus receptor activity


  • F, A, J, K, E, B, H, M, C, I, G, L


    Primary referenceStructural basis for the regulated protease and chaperone function of DegP., Krojer T, Sawa J, Schafer E, Saibil HR, Ehrmann M, Clausen T, Nature. 2008 May 21;. PMID:18496527
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (756 Kb) [Save to disk]
  • Biological Unit Coordinates (2zle.pdb1.gz) 749 Kb
  • CSU: Contacts of Structural Units for 2ZLE
  • Likely Quarternary Molecular Structure file(s) for 2ZLE
  • Retrieve 2ZLE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZLE from S2C, [Save to disk]
  • View 2ZLE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZLE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZLE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zle_I] [2zle_L] [2zle] [2zle_M] [2zle_E] [2zle_B] [2zle_H] [2zle_F] [2zle_K] [2zle_J] [2zle_G] [2zle_C] [2zle_A] [2zle_D]
  • SWISS-PROT database: [P0C0V0] [P06996]
  • Belongs to the general bacterial porin (gbp) family according to TCDB.
  • Domain organization of [DEGP_ECOLI] [OMPC_ECOLI] by SWISSPFAM
  • Domain found in 2ZLE: [PDZ ] by SMART
  • Other resources with information on 2ZLE
  • Community annotation for 2ZLE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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