2ZPY Cell Adhesion date Jul 31, 2008
title Crystal Structure Of The Mouse Radxin Ferm Domain Complexed Mouse Cd44 Cytoplasmic Peptide
authors T.Mori, K.Kitano, S.Terawaki, R.Maesaki, Y.Fukami, T.Hakoshima
compound source
Molecule: Radixin
Chain: A
Fragment: Ferm Domain (Residues 1-310)
Synonym: Esp10
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rdx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet49b(+)

Molecule: Cd44 Antigen
Chain: B
Fragment: Residues 293-312
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.231 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.700 66.182 86.217 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for CD44 recognition by ERM proteins., Mori T, Kitano K, Terawaki S, Maesaki R, Fukami Y, Hakoshima T, J Biol Chem. 2008 Oct 24;283(43):29602-12. Epub 2008 Aug 27. PMID:18753140
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2zpy.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 2ZPY
  • Likely Quarternary Molecular Structure file(s) for 2ZPY
  • Structure Factors (326 Kb)
  • Retrieve 2ZPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZPY from S2C, [Save to disk]
  • Re-refined 2zpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZPY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZPY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zpy_A] [2zpy] [2zpy_B]
  • SWISS-PROT database: [P15379] [P26043]
  • Domain organization of [CD44_MOUSE] [RADI_MOUSE] by SWISSPFAM
  • Domains found in 2ZPY: [B41] [FERM_C ] by SMART
  • Other resources with information on 2ZPY
  • Community annotation for 2ZPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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