360D Dna date Oct 29, 1997
title Structure Of 2,5-Bis{[4-(N-Ethylamidino)Phenyl]}Furan Comple D(Cpgpcpgpapaptptpcpgpcpg)-3'. A Minor Groove Drug Complex, Patterns Of Groove Hydration
authors A.Guerri, I.J.Simpson, S.Neidle
compound source
Molecule: Dna (5'-D(Cpgpcpgpapaptptpcpgpcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.240 39.940 65.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand BPF, MG enzyme
Primary referenceVisualisation of extensive water ribbons and networks in a DNA minor-groove drug complex., Guerri A, Simpson IJ, Neidle S, Nucleic Acids Res 1998 Jun 15;26(12):2873-8. PMID:9611230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (360d.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 360D
  • CSU: Contacts of Structural Units for 360D
  • Likely Quarternary Molecular Structure file(s) for 360D
  • Structure Factors (90 Kb)
  • Retrieve 360D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 360D from S2C, [Save to disk]
  • Re-refined 360d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 360D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 360D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 360D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [360d_A] [360d_B] [360d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 360D
  • Community annotation for 360D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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