361D Rna date Nov 10, 1997
title Crystal Structure Of Domain E Of Thermus Flavus 5s Rrna: A H Rna-Structure Including A Tetraloop
authors M.Perbandt, A.Nolte, S.Lorenz, V.A.Erdmann, C.Betzel
compound source
Molecule: Rna (5'- R(Cpupgpgpgpcpgpgpgpcpgpapcpcpgpcpc Pupg
Chain: A, B
Synonym: Domain E Of Thermus Flavus 5s Rrna
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 32 2 1
R_factor 0.241 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.680 42.680 161.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
Primary referenceCrystal structure of domain E of Thermus flavus 5S rRNA: a helical RNA structure including a hairpin loop., Perbandt M, Nolte A, Lorenz S, Bald R, Betzel C, Erdmann VA, FEBS Lett 1998 Jun 12;429(2):211-5. PMID:9650592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (361d.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (361d.pdb2.gz) 11 Kb
  • CSU: Contacts of Structural Units for 361D
  • Likely Quarternary Molecular Structure file(s) for 361D
  • Retrieve 361D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 361D from S2C, [Save to disk]
    • View 361D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 361D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 361D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [361d] [361d_A] [361d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 361D
  • Community annotation for 361D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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