378D Dna date Jan 28, 1998
title Structure Of The Side-By-Side Binding Of Distamycin To Dna
authors S.N.Mitra, M.C.Wahl, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Gptpaptpaptpapc)-3')
Chain: A, B, C, D
Engineered: Yes
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.550 42.180 43.380 90.00 96.56 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand DMY, NA enzyme
Primary referenceStructure of the side-by-side binding of distamycin to d(GTATATAC)2., Mitra SN, Wahl MC, Sundaralingam M, Acta Crystallogr D Biol Crystallogr 1999 Mar;55 ( Pt 3):602-9. PMID:10089456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (378d.pdb1.gz) 9 Kb
  • Biological Unit Coordinates (378d.pdb2.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 378D
  • CSU: Contacts of Structural Units for 378D
  • Likely Quarternary Molecular Structure file(s) for 378D
  • Retrieve 378D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 378D from S2C, [Save to disk]
    • View 378D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 378D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 378D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [378d_A] [378d_D] [378d_B] [378d_C] [378d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 378D
  • Community annotation for 378D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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