382D Dna date Mar 02, 1998
title Hydration And Recognition Of Methylated Cpg Steps In Dna.
authors C.Mayer-Jung, D.Moras, Y.Timsit
compound source
Molecule: Dna (5'-D(Cpcpgpcpcpgpgpcpgpg)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 65 2 2
R_factor 0.197 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.500 41.500 57.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG enzyme
Primary referenceHydration and recognition of methylated CpG steps in DNA., Mayer-Jung C, Moras D, Timsit Y, EMBO J 1998 May 1;17(9):2709-18. PMID:9564052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (382d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 382D
  • CSU: Contacts of Structural Units for 382D
  • Likely Quarternary Molecular Structure file(s) for 382D
  • Retrieve 382D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 382D from S2C, [Save to disk]
    • View 382D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 382D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 382D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [382d_A] [382d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 382D
  • Community annotation for 382D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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