3BTO	Oxidoreductase	date	Nov 08, 1996
title	Horse Liver Alcohol Dehydrogenase Complexed To Nadh And (1s, Butylthiolane 1-Oxide
authors	S.Ramaswamy, B.V.Plapp
compound		source
Molecule: Liver Alcohol Dehydrogenase Chain: A, B, C, D Synonym: Adh Ec: 1.1.1.1		Organism_scientific: Equus Caballus Organism_common: Horse Organism_taxid: 9796 Organ: Liver Cellular_location: Cytoplasm Other_details: Commercial Preparation Of Enzyme From Horse Cdna Sequence M64864
symmetry	Space Group: P 1 21 1	R_factor 0.185 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.930 180.200 86.800 90.00 106.00 90.00
method	X-Ray Diffraction	resolution	1.66 Å
ligand	NAD, SSB, ZN	enzyme	Oxidoreductase E.C.1.1.1.1 BRENDA
related structures	by homologous chain: 1QV6, 1U3V
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Flexibility of liver alcohol dehydrogenase in stereoselective binding of 3-butylthiolane 1-oxides., Cho H, Ramaswamy S, Plapp BV, Biochemistry 1997 Jan 14;36(2):382-9. PMID:9003191

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk] Biological Unit Coordinates (3bto.pdb1.gz) 129 Kb Biological Unit Coordinates (3bto.pdb2.gz) 131 Kb LPC: Ligand-Protein Contacts for 3BTO CSU: Contacts of Structural Units for 3BTO Likely Quarternary Molecular Structure file(s) for 3BTO Structure Factors (1186 Kb) Retrieve 3BTO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BTO from S2C, [Save to disk] Re-refined 3bto structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BTO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BTO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BTO, from MSDmotif at EBI Genome occurence of 3BTO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d3btoa1, region A:1-163,A:340-374 [Jmol] [rasmolscript] [script source]     - Domain d3btoa2, region A:164-339 [Jmol] [rasmolscript] [script source]     - Domain d3btob1, region B:1-163,B:340-374 [Jmol] [rasmolscript] [script source]     - Domain d3btob2, region B:164-339 [Jmol] [rasmolscript] [script source]     - Domain d3btoc1, region C:1-163,C:340-374 [Jmol] [rasmolscript] [script source]     - Domain d3btoc2, region C:164-339 [Jmol] [rasmolscript] [script source]     - Domain d3btod1, region D:1-163,D:340-374 [Jmol] [rasmolscript] [script source]     - Domain d3btod2, region D:164-339 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bto_C] [3bto_A] [3bto_B] [3bto] [3bto_D] SWISS-PROT database: [P00327] Domain organization of [ADH1E_HORSE] by SWISSPFAM

Other resources with information on 3BTO

Community annotation for 3BTO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 3BTO from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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