3CEV Hydrolase date Mar 15, 1999
title Arginase From Bacillus Caldevelox, Complexed With L-Arginine
authors M.C.Bewley, P.D.Jeffrey, M.L.Patchett, Z.F.Kanyo, E.N.Baker
compound source
Molecule: Protein (Arginase)
Chain: A, B, C, D, E, F
Ec: 3.5.3.1
Engineered: Yes
Other_details: Structure Contains Two Arginine Ligands Boun Molecule. One (Labelled R 407 - R 412) Is Bound In The Acti Coordinated To The Single Mn. The Other (Labelled R 401 - R At An External Site, Between Subunits. Each Molecule Has Ju Single Mn Ion At The Active Site (Mna) Instead Of The Usual Second Was Removed By Treatment With Edta.
Organism_scientific: Bacillus Caldovelox
Organism_taxid: 33931
Strain: Bacillus Species Dsm 411
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21
Other_details: Bacillus Species Dsm 411
symmetry Space Group: C 2 2 21
R_factor 0.193 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.800 277.700 140.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ARG, MN enzyme Hydrolase E.C.3.5.3.1 BRENDA
related structures by homologous chain: 1CEV, 2CEV
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of Bacillus caldovelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily., Bewley MC, Jeffrey PD, Patchett ML, Kanyo ZF, Baker EN, Structure Fold Des 1999 Apr 15;7(4):435-48. PMID:10196128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (3cev.pdb1.gz) 284 Kb
  • Biological Unit Coordinates (3cev.pdb2.gz) 145 Kb
  • Biological Unit Coordinates (3cev.pdb3.gz) 284 Kb
  • LPC: Ligand-Protein Contacts for 3CEV
  • CSU: Contacts of Structural Units for 3CEV
  • Likely Quarternary Molecular Structure file(s) for 3CEV
  • Retrieve 3CEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CEV from S2C, [Save to disk]
  • View 3CEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CEV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3ceva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d3cevb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d3cevc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d3cevd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d3ceve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d3cevf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cev_A] [3cev_F] [3cev_E] [3cev_D] [3cev_C] [3cev_B] [3cev]
  • SWISS-PROT database: [P53608]
  • Domain organization of [ARGI_BACCD] by SWISSPFAM
  • Other resources with information on 3CEV
  • Community annotation for 3CEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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