OCA Atlas for 3FCT

3FCT

Immune System

date

Jun 13, 1999

title

Mature Metal Chelatase Catalytic Antibody With Hapten

authors

F.E.Romesberg, B.D.Santarsiero, D.Barnes, J.Yin, B.Spiller, P.G.S R.C.Stevens

compound

source

Molecule: Protein (Metal Chelatase Catalytic Antibody)
Chain: A, C
Fragment: Fab Fragment
Engineered: Yes
Other_details: Chimeric Fab Fragment

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Swiss Webster
Cell_line: 7g12 Hybridoma
Organ: Spleen
Cell: B Lymphocyte
Cellular_location: Periplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Protein (Metal Chelatase Catalytic Antibody)
Chain: B, D
Fragment: Fab Fragment
Engineered: Yes
Other_details: Chimeric Fab Fragment

symmetry

Space Group: P 21 21 2

R_factor

0.206

R_Free

0.293

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
134.290	100.689	73.537	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.40 Å

ligand

CA, CD, MG, MMP, NA

enzyme

related structures

by homologous chain: 1CZ8, 1H8S, 1JHL, 1QOK

Primary reference

Structural and kinetic evidence for strain in biological catalysis., Romesberg FE, Santarsiero BD, Spiller B, Yin J, Barnes D, Schultz PG, Stevens RC, Biochemistry 1998 Oct 13;37(41):14404-9. PMID:9772166

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]

Biological Unit Coordinates (3fct.pdb1.gz) 74 Kb

Biological Unit Coordinates (3fct.pdb2.gz) 74 Kb

LPC: Ligand-Protein Contacts for 3FCT

CSU: Contacts of Structural Units for 3FCT

Likely Quarternary Molecular Structure file(s) for 3FCT

Structure Factors (259 Kb)

Retrieve 3FCT in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3FCT from S2C, [Save to disk]

Re-refined 3fct structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FCT in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FCT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 3FCT, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d3fcta1, region A:1-107 [Jmol] [rasmolscript] [script source]
- Domain d3fcta2, region A:108-213 [Jmol] [rasmolscript] [script source]
- Domain d3fctb1, region B:1-114 [Jmol] [rasmolscript] [script source]
- Domain d3fctb2, region B:115-216 [Jmol] [rasmolscript] [script source]
- Domain d3fctc1, region C:1-107 [Jmol] [rasmolscript] [script source]
- Domain d3fctc2, region C:108-213 [Jmol] [rasmolscript] [script source]
- Domain d3fctd1, region D:1-114 [Jmol] [rasmolscript] [script source]
- Domain d3fctd2, region D:115-216 [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fct_D] [3fct_B] [3fct_A] [3fct_C] [3fct]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 3FCT: [IG_like] [IGv ] by SMART

Other resources with information on 3FCT

Community annotation for 3FCT at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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