3PGM Transferase (Phosphoryl) date Apr 06, 1982
title The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm Re
authors J.W.Campbell, G.I.Hodgson, J.Warwicker, S.I.Winn, H.C.Watson
compound source
Molecule: Phosphoglycerate Mutase 1
Chain: A, B
Ec: 2.7.5.3
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.400 85.900 81.900 90.00 120.60 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 3PG, SO4 enzyme Transferase E.C.2.7.5.3 BRENDA
note 3PGM (Molecule of the Month:pdb50)supersedes 1PGM
related structures by homologous chain: 1BQ3
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and activity of phosphoglycerate mutase., Winn SI, Watson HC, Harkins RN, Fothergill LA, Philos Trans R Soc Lond B Biol Sci. 1981 Jun 26;293(1063):121-30. PMID:6115412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3pgm.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 3PGM
  • CSU: Contacts of Structural Units for 3PGM
  • Likely Quarternary Molecular Structure file(s) for 3PGM
  • Retrieve 3PGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PGM from S2C, [Save to disk]
  • View 3PGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PGM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PGM, from MSDmotif at EBI
  • Genome occurence of 3PGM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3pgm__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pgm_A] [3pgm_B] [3pgm]
  • SWISS-PROT database: [P00950]
  • Domain organization of [PMG1_YEAST] by SWISSPFAM
  • Domain found in 3PGM: [PGAM ] by SMART
  • Other resources with information on 3PGM
  • Community annotation for 3PGM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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