3A36 Hydrolase date Jun 10, 2009
title Structural Insight Into The Membrane Insertion Of Tail-Ancho Proteins By Get3
authors A.Yamagata, H.Mimura, Y.Sato, M.Yamashita, A.Yoshikawa, S.Fukai
compound source
Molecule: Atpase Get3
Chain: A, B
Synonym: Arr4p, Golgi To Er Traffic Protein 3, Membrane Pro Insertion;
Ec: 3.6.3.16
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Nrrl Y-53
Gene: 851458
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 21 21 2
R_factor 0.237 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.925 221.639 49.274 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ZN enzyme Hydrolase E.C.3.6.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insight into the membrane insertion of tail-anchored proteins by Get3., Yamagata A, Mimura H, Sato Y, Yamashita M, Yoshikawa A, Fukai S, Genes Cells. 2010 Jan;15(1):29-41. Epub 2009 Dec 15. PMID:20015340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3a36.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3A36
  • CSU: Contacts of Structural Units for 3A36
  • Structure Factors (224 Kb)
  • Retrieve 3A36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A36 from S2C, [Save to disk]
  • Re-refined 3a36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A36
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A36, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a36_A] [3a36] [3a36_B]
  • SWISS-PROT database: [Q12154]
  • Belongs to the c-terminal tail-anchored membrane protein biogenesis/ insertion complex (tamp-b) family according to TCDB.
  • Domain organization of [GET3_YEAST] by SWISSPFAM
  • Other resources with information on 3A36
  • Community annotation for 3A36 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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