3A9K	Signaling Protein Metal Binding Protein	date	Oct 29, 2009
title	Crystal Structure Of The Mouse Tab3-Nzf In Complex With Lys6 Di-Ubiquitin
authors	Y.Sato, A.Yoshikawa, M.Yamashita, A.Yamagata, S.Fukai
compound		source
Molecule: Ubiquitin Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ubiquitin Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: Ubiquitin Chain: B Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ubiquitin Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 7- Interacting Protein 3; Chain: C Fragment: Ranbp2-Type, Residues 688-716 Synonym: Tak1-Binding Protein 3 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Tab3 (Amino Acids 688 - 716) Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold Gst
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 29.900 71.018 71.562 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	ZN	enzyme
Primary reference	Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3., Sato Y, Yoshikawa A, Yamashita M, Yamagata A, Fukai S, EMBO J. 2009 Nov 19. PMID:19927120

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (3a9k.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 3A9K CSU: Contacts of Structural Units for 3A9K Structure Factors (372 Kb) Retrieve 3A9K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3A9K from S2C, [Save to disk] Re-refined 3a9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3A9K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3A9K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3A9K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a9k_A] [3a9k_B] [3a9k_C] [3a9k] SWISS-PROT database: [Q571K4] [P62991] Domain organization of [TAB3_MOUSE] [UBIQ_MOUSE] by SWISSPFAM Domains found in 3A9K: [UBQ] [ZnF_RBZ ] by SMART

Other resources with information on 3A9K

Community annotation for 3A9K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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