3ABS Lyase date Dec 21, 2009
title Crystal Structure Of Ethanolamine Ammonia-Lyase From Escheri Complexed With Adeninylpentylcobalamin And Ethanolamine
authors N.Shibata
compound source
Molecule: Ethanolamine Ammonia-Lyase Heavy Chain
Chain: A, C
Synonym: Ethanolamine Ammonia-Lyase Large Subunit
Ec: 4.3.1.7
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B2441, Eutb, Jw2434
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pusi2

Molecule: Ethanolamine Ammonia-Lyase Light Chain
Chain: B, D
Synonym: Ethanolamine Ammonia-Lyase Small Subunit
Ec: 4.3.1.7
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B2440, Eutc, Jw2433
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pusi2
symmetry Space Group: P 63
R_factor 0.214 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
242.730 242.730 76.660 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand COY, ETA, GOL, SO4 enzyme Lyase E.C.4.3.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates., Shibata N, Tamagaki H, Hieda N, Akita K, Komori H, Shomura Y, Terawaki S, Mori K, Yasuoka N, Higuchi Y, Toraya T, J Biol Chem. 2010 Aug 20;285(34):26484-93. Epub 2010 Jun 1. PMID:20519496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (390 Kb) [Save to disk]
  • Biological Unit Coordinates (3abs.pdb1.gz) 1135 Kb
  • Biological Unit Coordinates (3abs.pdb2.gz) 382 Kb
  • LPC: Ligand-Protein Contacts for 3ABS
  • CSU: Contacts of Structural Units for 3ABS
  • Structure Factors (975 Kb)
  • Retrieve 3ABS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ABS from S2C, [Save to disk]
  • Re-refined 3abs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ABS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ABS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ABS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3abs_B] [3abs] [3abs_C] [3abs_A] [3abs_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ABS
  • Community annotation for 3ABS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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