3AEH Hydrolase date Feb 04, 2010
title Integral Membrane Domain Of Autotransporter Hbp
authors N.Tajima, S.Y.Park, J.R.H.Tame
compound source
Molecule: Hemoglobin-Binding Protease Hbp Autotransporter
Chain: A, B
Fragment: Barrel Domain
Synonym: Hemoglobin-Binding Protease Hbp, Hemoglobin-Bindin Hbp Translocator, Helper Peptide, Hbp, Haemoglobin Protease
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Hbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.011 68.893 78.378 90.00 117.75 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel intein-like autoproteolytic mechanism in autotransporter proteins., Tajima N, Kawai F, Park SY, Tame JR, J Mol Biol. 2010 Oct 1;402(4):645-56. Epub 2010 Jul 6. PMID:20615416
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (3aeh.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3aeh.pdb2.gz) 46 Kb
  • CSU: Contacts of Structural Units for 3AEH
  • Structure Factors (829 Kb)
  • Retrieve 3AEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AEH from S2C, [Save to disk]
  • Re-refined 3aeh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AEH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AEH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3aeh_B] [3aeh_A] [3aeh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3AEH: [Autotransporter ] by SMART
  • Other resources with information on 3AEH
  • Community annotation for 3AEH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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