3AJD	Transferase	date	Jun 01, 2010
title	Crystal Structure Of Atrm4
authors	M.Hirano, M.Kuratani, S.Yokoyama, Riken Structural Genomicspro Initiative (Rsgi)
compound		source
Molecule: Putative Methyltransferase Mj0026 Chain: A Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_common: Methanococcus Jannaschii Organism_taxid: 2190 Gene: Mj0026 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 1 21 1	R_factor 0.168 R_Free 0.185
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.128 40.108 90.559 90.00 102.75 90.00
method	X-Ray Diffraction	resolution	1.27 Å
ligand	GOL, IPA	enzyme	Transferase E.C.2.1.1 BRENDA
note	3AJD is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin., Kuratani M, Hirano M, Goto-Ito S, Itoh Y, Hikida Y, Nishimoto M, Sekine S, Bessho Y, Ito T, Grosjean H, Yokoyama S, J Mol Biol. 2010 Aug 20;401(3):323-33. Epub 2010 Jun 30. PMID:20600111

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3ajd.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3AJD CSU: Contacts of Structural Units for 3AJD Structure Factors (540 Kb) Retrieve 3AJD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3AJD from S2C, [Save to disk] Re-refined 3ajd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3AJD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3AJD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3AJD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ajd] [3ajd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3AJD

Community annotation for 3AJD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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