3B1B Lyase date Jun 29, 2011
title The Unique Structure Of Wild Type Carbonic Anhydrase Alpha-C Chlamydomonas Reinhardtii
authors S.Shimizu, A.Takenaka
compound source
Molecule: Carbonic Anhydrase 1
Chain: A, B
Synonym: Carbonate Dehydratase 1, Ca1
Ec: 4.2.1.1
 Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055
symmetry Space Group: P 65
R_factor 0.187 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.300 134.300 120.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.88 Å
ligand NAG, SO4, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe unique structure of carbonic anhydrase alphaCA1 from Chlamydomonas reinhardtii., Suzuki K, Yang SY, Shimizu S, Morishita EC, Jiang J, Zhang F, Hoque MM, Sato Y, Tsunoda M, Sekiguchi T, Takenaka A, Acta Crystallogr D Biol Crystallogr. 2011 Oct;67(Pt 10):894-901. Epub 2011 Sep 8. PMID:21931221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3b1b.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 3B1B
  • CSU: Contacts of Structural Units for 3B1B
  • Structure Factors (6122 Kb)
  • Retrieve 3B1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B1B from S2C, [Save to disk]
  • Re-refined 3b1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B1B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B1B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b1b_A] [3b1b] [3b1b_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3B1B: [Carb_anhydrase ] by SMART
    • Other resources with information on 3B1B
  • Community annotation for 3B1B at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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