3B9B Hydrolase date Nov 04, 2007
title Structure Of The E2 Beryllium Fluoride Complex Of The Serca Atpase
authors C.Olesen, M.Picard, A.M.L.Winther, J.P.Morth, J.V.Moller, P.Nisse
compound source
Molecule: Sarcoplasmicendoplasmic Reticulum Calcium Atpase
Chain: A
Synonym: Calcium Pump 1, Serca1, Sr Ca2+, -Atpase 1, Calciu Transporting Atpase Sarcoplasmic Reticulum Type, Fast Twitc Muscle Isoform, Endoplasmic Reticulum Class 12 Ca2+, Atpas
Ec: 3.6.3.8
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Fast Twitch Skeletal Muscle
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.600 114.600 229.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand BEF, MG, NA enzyme Hydrolase E.C.3.6.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural basis of calcium transport by the calcium pump., Olesen C, Picard M, Winther AM, Gyrup C, Morth JP, Oxvig C, Moller JV, Nissen P, Nature. 2007 Dec 13;450(7172):1036-42. PMID:18075584
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (3b9b.pdb1.gz) 312 Kb
  • LPC: Ligand-Protein Contacts for 3B9B
  • CSU: Contacts of Structural Units for 3B9B
  • Likely Quarternary Molecular Structure file(s) for 3B9B
  • Structure Factors (362 Kb)
  • Retrieve 3B9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B9B from S2C, [Save to disk]
  • Re-refined 3b9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B9B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B9B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b9b_A] [3b9b]
  • SWISS-PROT database: [P04191]
  • Belongs to the p-type atpase (p-atpase) superfamily according to TCDB.
  • Domain organization of [AT2A1_RABIT] by SWISSPFAM
  • Domain found in 3B9B: [Cation_ATPase_N ] by SMART
    • Other resources with information on 3B9B
  • Community annotation for 3B9B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
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