3BO0	Ribosome	date	Dec 15, 2007
title	Ribosome-Secy Complex
authors	C.W.Akey, J.F.Menetret
compound		source
Molecule: 23s Ribosomal Rna Chain: D Fragment: Gb Residues 79-105 Other_details: Helix 7		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: 23s Ribosomal Rna Chain: E Fragment: Gb Residues 478-504 Other_details: Helix 24		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: 23s Ribosomal Rna Chain: F Fragment: Gb Residues 1385-1403 Other_details: Helix 47		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: 23s Ribosomal Rna Chain: G Fragment: Gb Residues 1518-1549 Other_details: Helix 59		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: Preprotein Translocase Secy Subunit Chain: A Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Preprotein Translocase Sece Subunit Chain: B Synonym: Protein Transport Protein Sec61 Gamma Subunit Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Preprotein Translocase Secg Subunit Chain: C Synonym: Protein Transport Protein Sec61 Subunit Beta Homol Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	9.60 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	Ribosome binding of a single copy of the SecY complex: implications for protein translocation., Menetret JF, Schaletzky J, Clemons WM Jr, Osborne AR, Skanland SS, Denison C, Gygi SP, Kirkpatrick DS, Park E, Ludtke SJ, Rapoport TA, Akey CW, Mol Cell. 2007 Dec 28;28(6):1083-92. PMID:18158904

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk] Biological Unit Coordinates (3bo0.pdb1.gz) 118 Kb CSU: Contacts of Structural Units for 3BO0 Likely Quarternary Molecular Structure file(s) for 3BO0 Retrieve 3BO0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BO0 from S2C, [Save to disk]

View 3BO0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BO0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BO0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bo0_C] [3bo0_B] [3bo0_A] [3bo0_D] [3bo0_G] [3bo0_F] [3bo0] [3bo0_E] SWISS-PROT database: [P60460] [Q60175] Belongs to the general secretory pathway (sec) family according to TCDB. Domain organization of [SECG_METJA] [SECY_METJA] by SWISSPFAM

Other resources with information on 3BO0

Community annotation for 3BO0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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