3BP2 Carboxylic Ester Hydrolase date Jun 27, 1983
title Role Of The N-Terminus In The Interaction Of Pancreatic Phos A2 With Aggregated Substrates. Properties And Crystal Struc Transaminated Phospholipase A2
authors B.W.Dijkstra, J.Drenth
compound source
Molecule: Phospholipase A2
Chain: A
Ec: 3.1.1.4
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.680 64.850 37.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, PYR enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1Y6O
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRole of the N-terminus in the interaction of pancreatic phospholipase A2 with aggregated substrates. Properties and crystal structure of transaminated phospholipase A2., Dijkstra BW, Kalk KH, Drenth J, de Haas GH, Egmond MR, Slotboom AJ, Biochemistry 1984 Jun 5;23(12):2759-66. PMID:6466614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3bp2.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3BP2
  • CSU: Contacts of Structural Units for 3BP2
  • Likely Quarternary Molecular Structure file(s) for 3BP2
  • Retrieve 3BP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BP2 from S2C, [Save to disk]
  • View 3BP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BP2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BP2, from MSDmotif at EBI
  • Genome occurence of 3BP2's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3bp2__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bp2_A] [3bp2]
  • SWISS-PROT database: [P00593]
  • Domain organization of [PA21B_BOVIN] by SWISSPFAM
  • Domain found in 3BP2: [PA2c ] by SMART
  • Other resources with information on 3BP2
  • Community annotation for 3BP2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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