3BRT	Transferase Transcription	date	Dec 21, 2007
title	Nemoikk Association Domain Structure
authors	L.F.Silvian
compound		source
Molecule: Inhibitor Of Nuclear Factor Kappa-B Kinase Subuni Inhibitor Of Nuclear Factor Kappa-B Kinase Subunit Alpha; Chain: A, C Fragment: Fusion Protein Consists Of Unp Residues 701-730 O And Nemo-Binding Domain Of Ikk-A; Synonym: I-Kappa-B-Kinase Beta, Ikbkb, Ikk-Beta, Ikk-B, I-K Kinase 2, Ikk2, Nuclear Factor Nf-Kappa-B Inhibitor Kinase Nfkbikb,I Kappa-B Kinase Alpha, Ikbka, Ikk-Alpha, Ikk-A, Ik Kinase, I-Kappa-B Kinase 1, Ikk1, Conserved Helix-Loop-Heli Ubiquitous Kinase, Nuclear Factor Nf-Kappa-B, Inhibitor Kin Nfkbika,; Ec: 2.7.11.10 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ikbkb, Ikkb Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
Molecule: Nf-Kappa-B Essential Modulator Chain: B, D Synonym: Nemo, Nf-Kappa-B Essential Modifier, Inhibitor Of Factor Kappa-B Kinase Subunit Gamma, Ikb Kinase Subunit Gam Kappa-B Kinase Gamma, Ikk-Gamma, Ikkg, Ikb Kinase-Associate 1, Ikkap1, Fip-3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ikbkg, Fip3, Nemo
symmetry	Space Group: P 21 21 21	R_factor 0.238 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.869 105.556 56.707 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand		enzyme	Transferase E.C.2.7.11.10 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structure of a NEMO/IKK-Associating Domain Reveals Architecture of the Interaction Site., Rushe M, Silvian L, Bixler S, Chen LL, Cheung A, Bowes S, Cuervo H, Berkowitz S, Zheng T, Guckian K, Pellegrini M, Lugovskoy A, Structure. 2008 May;16(5):798-808. PMID:18462684

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (3brt.pdb1.gz) 33 Kb Biological Unit Coordinates (3brt.pdb2.gz) 17 Kb Biological Unit Coordinates (3brt.pdb3.gz) 17 Kb Biological Unit Coordinates (3brt.pdb4.gz) 17 Kb Biological Unit Coordinates (3brt.pdb5.gz) 18 Kb CSU: Contacts of Structural Units for 3BRT Likely Quarternary Molecular Structure file(s) for 3BRT Structure Factors (178 Kb) Retrieve 3BRT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BRT from S2C, [Save to disk] Re-refined 3brt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BRT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BRT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BRT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3brt_C] [3brt_B] [3brt] [3brt_A] [3brt_D] SWISS-PROT database: [O15111] [O14920] [Q9Y6K9] Domain organization of [IKKA_HUMAN] [IKKB_HUMAN] [NEMO_HUMAN] by SWISSPFAM Domain found in 3BRT: [IKKbetaNEMObind ] by SMART

Other resources with information on 3BRT

Community annotation for 3BRT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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