3BT5 Structural Genomics, Unknown Function date Dec 27, 2007
title Crystal Structure Of Duf305 Fragment From Deinococcus Radiod
authors U.A.Ramagopal, Y.Patskovsky, M.Rutter, R.Toro, K.Bain, A.J.Meyer, T.Gheyi, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Uncharacterized Protein Duf305
Chain: A
Fragment: Residues 22-197
Engineered: Yes
 Organism_scientific: Deinococcus Radiodurans R1
Organism_taxid: 243230
Strain: R1 Dsm 20539 Ifo 15346 Lmg 4051 Ncib 9279
Atcc: 13939
Gene: Dr_1099
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx4(Bc)
symmetry Space Group: P 41
R_factor 0.154 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.690 49.690 71.191 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand CL enzyme
note 3BT5 is a representative structure
Gene DR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3bt5.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3BT5
  • CSU: Contacts of Structural Units for 3BT5
  • Likely Quarternary Molecular Structure file(s) for 3BT5
  • Structure Factors (530 Kb)
  • Retrieve 3BT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BT5 from S2C, [Save to disk]
  • Re-refined 3bt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BT5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BT5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bt5] [3bt5_A]
  • SWISS-PROT database: [Q9RVD0]
  • Domain organization of [Q9RVD0_DEIRA] by SWISSPFAM
    • Other resources with information on 3BT5
  • Community annotation for 3BT5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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