3BV9	Hydrolase Hydrolase Inhibitor	date	Jan 05, 2008
title	Structure Of Thrombin Bound To The Inhibitor Fm19
authors	M.T.Nieman, F.Burke, M.Warnock, Y.Zhou, J.Sweigert, A.Chen, D.Rick B.R.Lucchesi, Z.Chen, E.Di Cera, J.Hilfinger, H.I.Mosberg, A.H.S
compound		source
Molecule: Thrombin Light Chain Chain: A Ec: 3.4.21.5 Engineered: Yes		Synthetic: Yes
Molecule: Thrombin Heavy Chain Chain: B Ec: 3.4.21.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
Molecule: Fm19 Inhibitor Chain: C Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 61 2 2	R_factor 0.190 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.907 80.907 183.718 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	4PH, DAL, DAR, GOL, IOD, NA, NH2, OIC	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Thrombostatin FM compounds: direct thrombin inhibitors - mechanism of action in vitro and in vivo., Nieman MT, Burke F, Warnock M, Zhou Y, Sweigart J, Chen A, Ricketts D, Lucchesi BR, Chen Z, Di Cera E, Hilfinger J, Kim JS, Mosberg HI, Schmaier AH, J Thromb Haemost. 2008 Feb 25;. PMID:18315550

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (3bv9.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 3BV9 CSU: Contacts of Structural Units for 3BV9 Likely Quarternary Molecular Structure file(s) for 3BV9 Structure Factors (450 Kb) Retrieve 3BV9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BV9 from S2C, [Save to disk] Re-refined 3bv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BV9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BV9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BV9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bv9_C] [3bv9] [3bv9_A] [3bv9_B] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 3BV9: [Tryp_SPc ] by SMART

Other resources with information on 3BV9

Community annotation for 3BV9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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