3C6P	Signaling Protein	date	Feb 04, 2008
title	Small Molecule Agonists And Antagonists Of F-Box Protein-Sub Interactions In Auxin Perception And Signaling
authors	X.Tan
compound		source
Molecule: Skp1-Like Protein 1a Chain: A Synonym: Skp1-Like 1, Ufo-Binding Protein 1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Skp1a, Ask1, Skp1, Uip1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Transport Inhibitor Response 1 Chain: B Synonym: F-Boxlrr-Repeat Protein 1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Tir1, Fbl1, Wei1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: C 1 2 1	R_factor 0.180 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.794 80.386 125.206 90.00 104.72 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	2S3, IHP	enzyme
Gene Ontology	Chain Function Process Component A B SCF ubiquitin ligase complex...
Primary reference	Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling., Hayashi K, Tan X, Zheng N, Hatate T, Kimura Y, Kepinski S, Nozaki H, Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5632-7. Epub 2008 Apr 7. PMID:18391211

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (3c6p.pdb1.gz) 110 Kb LPC: Ligand-Protein Contacts for 3C6P CSU: Contacts of Structural Units for 3C6P Likely Quarternary Molecular Structure file(s) for 3C6P Structure Factors (667 Kb) Retrieve 3C6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C6P from S2C, [Save to disk]

View 3C6P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3C6P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C6P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c6p_A] [3c6p_B] [3c6p] SWISS-PROT database: [Q39255] [Q570C0] Domain organization of [SKP1A_ARATH] [TIR1_ARATH] by SWISSPFAM Domains found in 3C6P: [FBOX] [LRR] [Skp1 ] by SMART

Other resources with information on 3C6P

Community annotation for 3C6P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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