3C8J Immune System date Feb 12, 2008
title The Crystal Structure Of Natural Killer Cell Receptor Ly49c
authors L.Deng, R.A.Mariuzza
compound source
Molecule: Natural Killer Cell Receptor Ly49c
Chain: A, B, C, D
Fragment: Unp Residues 65-266
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.097 94.892 104.192 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceMolecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors., Deng L, Cho S, Malchiodi EL, Kerzic MC, Dam J, Mariuzza RA, J Biol Chem. 2008 Jun 13;283(24):16840-9. Epub 2008 Apr 21. PMID:18426793
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3c8j.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3c8j.pdb2.gz) 44 Kb
  • CSU: Contacts of Structural Units for 3C8J
  • Likely Quarternary Molecular Structure file(s) for 3C8J
  • Structure Factors (208 Kb)
  • Retrieve 3C8J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C8J from S2C, [Save to disk]
  • Re-refined 3c8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C8J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C8J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C8J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c8j] [3c8j_D] [3c8j_A] [3c8j_B] [3c8j_C]
  • SWISS-PROT database: [Q64329]
  • Domain organization of [KLRA3_MOUSE] by SWISSPFAM
  • Domain found in 3C8J: [CLECT ] by SMART
  • Other resources with information on 3C8J
  • Community annotation for 3C8J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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