3CAY De Novo Protein date Feb 20, 2008
title Crystal Structure Of Lipopeptide Detergent (Lpd-12)
authors D.N.Ho, N.C.Pomroy, J.A.Cuesta-Seijo, G.G.Prive
compound source
Molecule: Lpd-12
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
 Synthetic: Yes
Other_details: De Novo Designed Lipopeptide
symmetry Space Group: P 21 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.484 130.040 42.807 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand ACE, LMT, NH2, O12 enzyme
Primary referenceCrystal structure of a self-assembling lipopeptide detergent at 1.20 A., Ho DN, Pomroy NC, Cuesta-Seijo JA, Prive GG, Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12861-6. Epub 2008 Aug 27. PMID:18753631
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3cay.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (3cay.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3CAY
  • CSU: Contacts of Structural Units for 3CAY
  • Likely Quarternary Molecular Structure file(s) for 3CAY
  • Structure Factors (971 Kb)
  • Retrieve 3CAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CAY from S2C, [Save to disk]
  • Re-refined 3cay structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CAY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CAY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cay_B] [3cay_H] [3cay_I] [3cay_D] [3cay_K] [3cay_E] [3cay_F] [3cay] [3cay_A] [3cay_G] [3cay_J] [3cay_C] [3cay_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3CAY
  • Community annotation for 3CAY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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