3CBI Hydrolase date Feb 22, 2008
title Crystal Structure Of The Ternary Complex Of Phospholipase A2 Ajmaline And Anisic Acid At 3.1 A Resolution
authors S.Kumar, G.Vikram, N.Singh, S.Sharma, P.Kaur, T.P.Singh
compound source
Molecule: Phospholipase A2 Vrv-Pl-Viiia
Chain: A, B, C, D
Synonym: Phosphatidylcholine 2- Acylhydrolase, Dpla2
Ec: 3.1.1.4
 Organism_scientific: Daboia Russellii Pulchella
Organism_taxid: 97228
Strain: Pulchella
symmetry Space Group: P 32
R_factor 0.228 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.799 108.799 43.339 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
ligand AJM, ANN enzyme Hydrolase E.C.3.1.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • toxin activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3cbi.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3cbi.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (3cbi.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (3cbi.pdb4.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3CBI
  • CSU: Contacts of Structural Units for 3CBI
  • Likely Quarternary Molecular Structure file(s) for 3CBI
  • Structure Factors (83 Kb)
  • Retrieve 3CBI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CBI from S2C, [Save to disk]
  • Re-refined 3cbi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CBI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CBI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cbi_D] [3cbi_A] [3cbi_C] [3cbi] [3cbi_B]
  • SWISS-PROT database: [P59071]
  • Domain organization of [PA28_DABRR] by SWISSPFAM
  • Domain found in 3CBI: [PA2c ] by SMART
    • Other resources with information on 3CBI
  • Community annotation for 3CBI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science