3CCY Transcription Regulator date Feb 26, 2008
title Crystal Structure Of A Tetr-Family Transcriptional Regulator Bordetella Parapertussis 12822
authors K.Tan, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Structur Genomics (Mcsg)
compound source
Molecule: Putative Tetr-Family Transcriptional Regulator
Chain: A
Engineered: Yes
 Organism_scientific: Bordetella Parapertussis 12822
Organism_taxid: 257311
Strain: 12822 Nctc 13253
Atcc: Baa-587
Gene: Bpp2833
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: I 2 2 2
R_factor 0.198 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.920 56.989 168.271 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3ccy.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3CCY
  • CSU: Contacts of Structural Units for 3CCY
  • Likely Quarternary Molecular Structure file(s) for 3CCY
  • Structure Factors (278 Kb)
  • Retrieve 3CCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CCY from S2C, [Save to disk]
  • Re-refined 3ccy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CCY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CCY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ccy_A] [3ccy]
  • SWISS-PROT database: [Q7W6R8]
  • Domain organization of [Q7W6R8_BORPA] by SWISSPFAM
    • Other resources with information on 3CCY
  • Community annotation for 3CCY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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