3CGF	Transferase	date	Mar 05, 2008
title	Irak-4 Inhibitors (Part II)- A Structure Based Assessment Of Imidazo[1,2 A]Pyridine Binding
authors	T.A.Ceska, A.Platt, M.Fortunato, K.M.Dickson, G.Buckley
compound		source
Molecule: Mitogen-Activated Protein Kinase 10 Chain: A Fragment: Protein Kinase Domain, Unp Residues 40-402 Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N-Term Kinase 3, Map Kinase P49 3f12; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Mapk10, Jnk3, Jnk3a, Prkm10 Expression_system: Escherichia Coli
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.317
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.170 71.370 107.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	JNF BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	IRAK-4 inhibitors. Part II: A structure-based assessment of imidazo[1,2-a]pyridine binding., Buckley GM, Ceska TA, Fraser JL, Gowers L, Groom CR, Higueruelo AP, Jenkins K, Mack SR, Morgan T, Parry DM, Pitt WR, Rausch O, Richard MD, Sabin V, Bioorg Med Chem Lett. 2008 Jun 1;18(11):3291-5. Epub 2008 Apr 22. PMID:18482836

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (3cgf.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 3CGF CSU: Contacts of Structural Units for 3CGF Likely Quarternary Molecular Structure file(s) for 3CGF Structure Factors (70 Kb) Retrieve 3CGF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CGF from S2C, [Save to disk] Re-refined 3cgf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CGF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CGF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CGF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cgf_A] [3cgf] SWISS-PROT database: [A6NG28] [P53779] Domain organization of [A6NG28_HUMAN] [MK10_HUMAN] by SWISSPFAM Domain found in 3CGF: [S_TKc ] by SMART

Other resources with information on 3CGF

Community annotation for 3CGF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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