3CGH Crystal structure of a susd homolog (bt_3984) from bacteroides thetaiotaomicron vpi-5482 at 1.70 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand ACT, MSE, ZN enzyme
Gene BT ; NP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules., Bakolitsa C, Xu Q, Rife CL, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1274-80. Epub 2010 Sep 22. PMID:20944222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3cgh.pdb1.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 3CGH
  • CSU: Contacts of Structural Units for 3CGH
  • Likely Quarternary Molecular Structure file(s) for 3CGH
  • Structure Factors (8650 Kb)
  • Retrieve 3CGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CGH from S2C, [Save to disk]
  • Re-refined 3cgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CGH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CGH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cgh] [3cgh_A]
  • SWISS-PROT database: [Q8A0N7]
  • Belongs to the glycan-binding protein (susd) family according to TCDB.
  • Domain organization of [Q8A0N7_BACTN] by SWISSPFAM
    • Other resources with information on 3CGH
  • Community annotation for 3CGH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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