3CJO Motor Protein date Mar 13, 2008
title Crystal Structure Of Ksp In Complex With Inhibitor 30
authors Y.Yan
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A, B
Synonym: Kinesin-Related Motor Protein Eg5, Kinesin-Like Sp Protein Hksp, Thyroid Receptor-Interacting Protein 5, Trip- Kinesin-Like Protein 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Kif11, Eg5, Knsl1, Trip5
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.758 79.374 158.853 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand ADP, K30, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceKinesin Spindle Protein (KSP) Inhibitors. 9. Discovery of (2S)-4-(2,5-Difluorophenyl)-N-[(3R,4S)-3-fluoro-1-methylpiperidin-4-yl]-2- (hydroxymethyl)-N-methyl-2-phenyl-2,5-dihydro-1H-pyrrole-1-carboxamide (MK-0731) for the Treatment of Taxane-Refractory Cancer., Cox CD, Coleman PJ, Breslin MJ, Whitman DB, Garbaccio RM, Fraley ME, Buser CA, Walsh ES, Hamilton K, Schaber MD, Lobell RB, Tao W, Davide JP, Diehl RE, Abrams MT, South VJ, Huber HE, Torrent M, Prueksaritanont T, Li C, Slaughter DE, Mahan E, Fernandez-Metzler C, Yan Y, Kuo LC, Kohl NE, Hartman GD, J Med Chem. 2008 Jun 25;. PMID:18578472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3cjo.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (3cjo.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3CJO
  • CSU: Contacts of Structural Units for 3CJO
  • Likely Quarternary Molecular Structure file(s) for 3CJO
  • Structure Factors (276 Kb)
  • Retrieve 3CJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CJO from S2C, [Save to disk]
  • Re-refined 3cjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CJO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CJO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cjo_A] [3cjo_B] [3cjo]
  • SWISS-PROT database: [P52732]
  • Domain organization of [KIF11_HUMAN] by SWISSPFAM
  • Domain found in 3CJO: [KISc ] by SMART
    • Other resources with information on 3CJO
  • Community annotation for 3CJO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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