3COI Transferase date Mar 28, 2008
title Crystal Structure Of P38delta Kinase
authors S.Atwell, S.K.Burley, A.Houle, A.Ramos, J.M.Sauder, New York Sgx Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Mitogen-Activated Protein Kinase 13
Chain: A
Synonym: Stress-Activated Protein Kinase 4, Mitogen-Activat Kinase P38 Delta, Map Kinase P38 Delta;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Hepg2
Gene: Mapk13, Prkm13, Sapk4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx4
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.271 71.305 97.933 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand
enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of inter...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3coi.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 3COI
  • Likely Quarternary Molecular Structure file(s) for 3COI
  • Structure Factors (1451 Kb)
  • Retrieve 3COI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3COI from S2C, [Save to disk]
  • Re-refined 3coi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3COI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3COI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3COI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3coi] [3coi_A]
  • SWISS-PROT database: [O15264]
  • Domain organization of [MK13_HUMAN] by SWISSPFAM
  • Domain found in 3COI: [S_TKc ] by SMART
  • Other resources with information on 3COI
  • Community annotation for 3COI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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