3CS0	Hydrolase	date	Apr 08, 2008
title	Crystal Structure Of Degp24
authors	T.Krojer, J.Sawa, E.Schaefer, H.R.Saibil, M.Ehrmann, T.Clausen
compound		source
Molecule: Periplasmic Serine Endoprotease Degp Chain: A Synonym: Heat Shock Protein Degp,Protease Do Ec: 3.4.21.107 Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Degp, Htra, Ptd, B0161, Jw0157 Expression_system: Escherichia Coli (Strain K12) Expression_system_taxid: 83333 Expression_system_strain: K12 Expression_system_vector_type: Plasmid
Molecule: Pentapeptide Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333
symmetry	Space Group: F 4 3 2	R_factor 0.212 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 253.929 253.929 253.929 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	MSE	enzyme	Hydrolase E.C.3.4.21.107 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the regulated protease and chaperone function of DegP., Krojer T, Sawa J, Schafer E, Saibil HR, Ehrmann M, Clausen T, Nature. 2008 May 21;. PMID:18496527

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (3cs0.pdb1.gz) 1389 Kb LPC: Ligand-Protein Contacts for 3CS0 CSU: Contacts of Structural Units for 3CS0 Likely Quarternary Molecular Structure file(s) for 3CS0 Structure Factors (256 Kb) Retrieve 3CS0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CS0 from S2C, [Save to disk] Re-refined 3cs0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CS0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CS0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CS0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cs0] [3cs0_A] [3cs0_B] SWISS-PROT database: [P0C0V0] Domain organization of [DEGP_ECOLI] by SWISSPFAM Domain found in 3CS0: [PDZ ] by SMART

Other resources with information on 3CS0

Community annotation for 3CS0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---