3CVC Electron Transport date Apr 18, 2008
title Regulation Of Protein Function: Crystal Packing Interfaces A Conformational Dimerization
authors P.B.Crowley, P.M.Matias, H.Mi, S.J.Firbank, M.J.Banfield, C.Denni
compound source
Molecule: Plastocyanin
Chain: A
Engineered: Yes
 Organism_scientific: Phormidium Laminosum
Organism_taxid: 32059
Gene: Pete
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.131 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.985 55.520 64.992 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand CU, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceRegulation of Protein Function: Crystal Packing Interfaces and Conformational Dimerization., Crowley PB, Matias PM, Mi H, Firbank SJ, Banfield MJ, Dennison C, Biochemistry. 2008 May 15;. PMID:18479147
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3cvc.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3CVC
  • CSU: Contacts of Structural Units for 3CVC
  • Likely Quarternary Molecular Structure file(s) for 3CVC
  • Structure Factors (140 Kb)
  • Retrieve 3CVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CVC from S2C, [Save to disk]
  • Re-refined 3cvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CVC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CVC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cvc_A] [3cvc]
  • SWISS-PROT database: [Q51883]
  • Domain organization of [PLAS_PHOLA] by SWISSPFAM
    • Other resources with information on 3CVC
  • Community annotation for 3CVC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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