3D4P	Oxidoreductase	date	May 14, 2008
title	Crystal Structure Of Lactate Dehydrogenase From Staphylococc Complexed With Nad And Pyruvate
authors	V.L.Schramm, S.C.Almo, J.A.Gutierrez, M.Ho
compound		source
Molecule: L-Lactate Dehydrogenase 1 Chain: A, B Synonym: L-Ldh 1 Ec: 1.1.1.27 Engineered: Yes		Organism_scientific: Staphylococcus Aureus Subsp. Aureus Co Organism_taxid: 93062 Gene: Ldh1, Sacol0222 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.163 R_Free 0.188
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.868 74.916 95.874 90.00 128.90 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	NAD, PYR	enzyme	Oxidoreductase E.C.1.1.1.27 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (3d4p.pdb1.gz) 203 Kb Biological Unit Coordinates (3d4p.pdb2.gz) 103 Kb Biological Unit Coordinates (3d4p.pdb3.gz) 102 Kb LPC: Ligand-Protein Contacts for 3D4P CSU: Contacts of Structural Units for 3D4P Likely Quarternary Molecular Structure file(s) for 3D4P Structure Factors (1015 Kb) Retrieve 3D4P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D4P from S2C, [Save to disk] Re-refined 3d4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D4P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D4P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D4P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d4p_B] [3d4p] [3d4p_A] SWISS-PROT database: [Q5HJD7] Domain organization of [LDH1_STAAC] by SWISSPFAM

Other resources with information on 3D4P

Community annotation for 3D4P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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