3D7E	Transferase	date	May 21, 2008
title	Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala With Glycerol
authors	J.I.Yeh, A.Vahedi-Faridi
compound		source
Molecule: Glycerol Kinase Chain: O, X Synonym: Atp:Glycerol 3-Phosphotransferase, Glycerokinase, Ec: 2.7.1.30 Engineered: Yes Mutation: Yes		Organism_scientific: Enterococcus Casseliflavus Organism_common: Enterococcus Flavescens Organism_taxid: 37734 Gene: Glpk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Poxo4
symmetry	Space Group: P 21 21 2	R_factor 0.191 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.572 200.019 56.431 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	GOL	enzyme	Transferase E.C.2.7.1.30 BRENDA
Gene Ontology	Chain Function Process Component O, X
Primary reference	Structural characterizations of glycerol kinase: unraveling phosphorylation-induced long-range activation., Yeh JI, Kettering R, Saxl R, Bourand A, Darbon E, Joly N, Briozzo P, Deutscher J, Biochemistry. 2009 Jan 20;48(2):346-56. PMID:19102629

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (3d7e.pdb1.gz) 158 Kb LPC: Ligand-Protein Contacts for 3D7E CSU: Contacts of Structural Units for 3D7E Likely Quarternary Molecular Structure file(s) for 3D7E Structure Factors (525 Kb) Retrieve 3D7E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D7E from S2C, [Save to disk] Re-refined 3d7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D7E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D7E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D7E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d7e_X] [3d7e] [3d7e_O] SWISS-PROT database: [O34153] Domain organization of [GLPK_ENTCA] by SWISSPFAM

Other resources with information on 3D7E

Community annotation for 3D7E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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