3DCO	Motor Protein	date	Jun 04, 2008
title	Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked Into Angstrom Cryo-Em Map Of Nucleotide-Free Nod Complexed To Th Microtubule
authors	C.V.Sindelar, J.C.Cochran, F.J.Kull
compound		source
Molecule: Kinesin-Like Protein Nod Chain: N Fragment: Catalytic Core Domain (Residues 1-318) Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Cg1763, Nod, Noda Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
Molecule: Bovine Alpha Tubulin Chain: A Fragment: Alpha Tubulin Subunit		Organism_scientific: Bos Taurus Organism_taxid: 9913
Molecule: Bovine Beta Tubulin Chain: B Fragment: Beta Tubulin Subunit		Organism_scientific: Bos Taurus Organism_taxid: 9913
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	11.00 Å
ligand	ADP, GDP, GTP, MG, TA1, ZN	enzyme
Gene Ontology	Chain Function Process Component A B N
Primary reference	ATPase cycle of the nonmotile kinesin NOD allows microtubule end tracking and drives chromosome movement., Cochran JC, Sindelar CV, Mulko NK, Collins KA, Kong SE, Hawley RS, Kull FJ, Cell. 2009 Jan 9;136(1):110-22. PMID:19135893

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (3dco.pdb1.gz) 181 Kb LPC: Ligand-Protein Contacts for 3DCO CSU: Contacts of Structural Units for 3DCO Likely Quarternary Molecular Structure file(s) for 3DCO Retrieve 3DCO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DCO from S2C, [Save to disk]

View 3DCO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DCO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DCO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dco_N] [3dco_A] [3dco_B] [3dco] SWISS-PROT database: [P18105] [P81947] [Q6B856] Domain organization of [NOD_DROME] [TBA1B_BOVIN] [TBB2B_BOVIN] by SWISSPFAM Domains found in 3DCO: [KISc] [Tubulin] [Tubulin_C ] by SMART

Other resources with information on 3DCO

Community annotation for 3DCO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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