3DG1 Protein Fibril date Jun 12, 2008
title Segment Sstnvg Derived From Iapp
authors J.J.Wiltzius, S.A.Sievers, M.R.Sawaya, D.Cascio, D.Eisenberg
compound source
Molecule: Sstnvg From Islet Amyloid Polypeptide
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.400 4.785 18.594 90.00 115.88 90.00
method X-Ray Diffractionresolution 1.66 Å
Primary referenceAtomic structure of the cross-{beta} spine of Islet Amyloid Polypeptide (Amylin)., Wiltzius JJ, Sievers SA, Sawaya MR, Cascio D, Popov D, Riekel C, Eisenberg D, Protein Sci. 2008 Jun 12;. PMID:18556473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4 Kb) [Save to disk]
  • Biological Unit Coordinates (3dg1.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 3DG1
  • Likely Quarternary Molecular Structure file(s) for 3DG1
  • Structure Factors (6 Kb)
  • Retrieve 3DG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DG1 from S2C, [Save to disk]
  • Re-refined 3dg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DG1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DG1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m3dg1, region G:4-114 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dg1] [3dg1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3DG1
  • Community annotation for 3DG1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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