3DJ3 Signaling Protein date Jun 21, 2008
title Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
authors Y.Shen
compound source
Molecule: Tax1-Binding Protein 3
Chain: A, B, C, D
Fragment: C-Terminal Truncation, Unp Residues 1-112
Synonym: Tax Interaction Protein 1, Tip-1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.265 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.808 86.808 81.909 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Basis of beta-Catenin Recognition by Tax-interacting Protein-1., Zhang J, Yan X, Shi C, Yang X, Guo Y, Tian C, Long J, Shen Y, J Mol Biol. 2008 Sep 21. PMID:18835279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3dj3.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (3dj3.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (3dj3.pdb3.gz) 17 Kb
  • Biological Unit Coordinates (3dj3.pdb4.gz) 17 Kb
  • CSU: Contacts of Structural Units for 3DJ3
  • Likely Quarternary Molecular Structure file(s) for 3DJ3
  • Structure Factors (194 Kb)
  • Retrieve 3DJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DJ3 from S2C, [Save to disk]
  • Re-refined 3dj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DJ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DJ3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dj3_D] [3dj3_B] [3dj3] [3dj3_C] [3dj3_A]
  • SWISS-PROT database: [Q9DBG9]
  • Domain organization of [TX1B3_MOUSE] by SWISSPFAM
  • Domain found in 3DJ3: [PDZ ] by SMART
    • Other resources with information on 3DJ3
  • Community annotation for 3DJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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