3DNE Transferase Transferase Inhibitor date Jul 02, 2008
title Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki
authors A.Schiffer, K.U.Wendt
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha
Chain: I
Fragment: Inhibitory Fragment, Unp Residues 6-25
Synonym: Camp-Dependent Protein Kinase Inhibitor, Musclebr Isoform, Pki-Alpha;
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Construct
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.841 75.438 79.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand LL1, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceCrystallography-independent determination of ligand binding modes., Orts J, Tuma J, Reese M, Grimm SK, Monecke P, Bartoschek S, Schiffer A, Wendt KU, Griesinger C, Carlomagno T, Angew Chem Int Ed Engl. 2008;47(40):7736-40. PMID:18767090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3dne.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3DNE
  • CSU: Contacts of Structural Units for 3DNE
  • Likely Quarternary Molecular Structure file(s) for 3DNE
  • Structure Factors (444 Kb)
  • Retrieve 3DNE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DNE from S2C, [Save to disk]
  • Re-refined 3dne structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DNE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DNE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DNE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dne] [3dne_I] [3dne_A]
  • SWISS-PROT database: [P61926] [P00517]
  • Domain organization of [IPKA_RABIT] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 3DNE: [S_TK_X] [S_TKc ] by SMART
    • Other resources with information on 3DNE
  • Community annotation for 3DNE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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