3DOH	Hydrolase	date	Jul 04, 2008
title	Crystal Structure Of A Thermostable Esterase
authors	M.Levisson, L.Sun, S.Hendriks, B.W.Dijkstra, J.Van Der Oost, S.W.
compound		source
Molecule: Esterase Chain: A, B Fragment: Residues 16-395 Ec: 3.1.1.1 Engineered: Yes		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Strain: Msb8 Gene: Tm_0033 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-24d
symmetry	Space Group: H 3 2	R_factor 0.197 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.157 130.157 306.184 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	SO4	enzyme	Hydrolase E.C.3.1.1.1 BRENDA
Gene	TM
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure and biochemical properties of a novel thermostable esterase containing an immunoglobulin-like domain., Levisson M, Sun L, Hendriks S, Swinkels P, Akveld T, Bultema JB, Barendregt A, van den Heuvel RH, Dijkstra BW, van der Oost J, Kengen SW, J Mol Biol. 2009 Jan 23;385(3):949-62. Epub 2008 Nov 5. PMID:19013466

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (3doh.pdb1.gz) 363 Kb Biological Unit Coordinates (3doh.pdb2.gz) 64 Kb Biological Unit Coordinates (3doh.pdb3.gz) 62 Kb LPC: Ligand-Protein Contacts for 3DOH CSU: Contacts of Structural Units for 3DOH Likely Quarternary Molecular Structure file(s) for 3DOH Structure Factors (499 Kb) Retrieve 3DOH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DOH from S2C, [Save to disk] Re-refined 3doh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DOH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DOH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DOH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3doh_A] [3doh] [3doh_B] SWISS-PROT database: [Q9WXP0] Domain organization of [Q9WXP0_THEMA] by SWISSPFAM

Other resources with information on 3DOH

Community annotation for 3DOH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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