3DPD Transferase date Jul 08, 2008
title Achieving Multi-Isoform Pi3k Inhibition In A Series Of Subst 4-Dihydro-2h-Benzo[1,4]Oxazines
authors T.A.Ceska
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Residues 144-1102
Synonym: Pi3-Kinase P110 Subunit Gamma, Ptdins-3-Kinase Sub Pi3kgamma, Pi3k, P120-Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1393
symmetry Space Group: C 1 2 1
R_factor 0.242 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.230 67.770 105.870 90.00 95.96 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand 41A BindingDB enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAchieving multi-isoform PI3K inhibition in a series of substituted 3,4-dihydro-2H-benzo[1,4]oxazines., Perry B, Alexander R, Bennett G, Buckley G, Ceska T, Crabbe T, Dale V, Gowers L, Horsley H, James L, Jenkins K, Crepy K, Kulisa C, Lightfoot H, Lock C, Mack S, Morgan T, Nicolas AL, Pitt W, Sabin V, Wright S, Bioorg Med Chem Lett. 2008 Aug 15;18(16):4700-4. Epub 2008 Jul 5. PMID:18644721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3dpd.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 3DPD
  • CSU: Contacts of Structural Units for 3DPD
  • Likely Quarternary Molecular Structure file(s) for 3DPD
  • Structure Factors (1052 Kb)
  • Retrieve 3DPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DPD from S2C, [Save to disk]
  • Re-refined 3dpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DPD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DPD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dpd_A] [3dpd]
  • SWISS-PROT database: [P48736]
  • Domain organization of [PK3CG_HUMAN] by SWISSPFAM
  • Domains found in 3DPD: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 3DPD
  • Community annotation for 3DPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science