3E6M Transcription Regulator date Aug 15, 2008
title The Crystal Structure Of A Marr Family Transcriptional Regulator From Silicibacter Pomeroyi Dss.
authors K.Tan, L.Volkart, L.Freeman, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Marr Family Transcriptional Regulator
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Organism_scientific: Silicibacter Pomeroyi
Organism_taxid: 89184
Strain: Dss
Gene: Spoa0451
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.433 93.198 101.556 90.00 90.02 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (3e6m.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (3e6m.pdb2.gz) 98 Kb
  • Biological Unit Coordinates (3e6m.pdb3.gz) 98 Kb
  • Biological Unit Coordinates (3e6m.pdb4.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 3E6M
  • CSU: Contacts of Structural Units for 3E6M
  • Likely Quarternary Molecular Structure file(s) for 3E6M
  • Structure Factors (1535 Kb)
  • Retrieve 3E6M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E6M from S2C, [Save to disk]
  • Re-refined 3e6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3E6M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3E6M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E6M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e6m_F] [3e6m_H] [3e6m_D] [3e6m] [3e6m_C] [3e6m_E] [3e6m_G] [3e6m_A] [3e6m_B]
  • SWISS-PROT database: [Q5LLB9]
  • Domain organization of [Q5LLB9_SILPO] by SWISSPFAM
  • Domain found in 3E6M: [HTH_MARR ] by SMART
    • Other resources with information on 3E6M
  • Community annotation for 3E6M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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